diff --git a/CMakeLists.txt b/CMakeLists.txt
index 67b90d3b0ba71a522330e670a77a8d84209831ab..0c47e4a1410654297cc048cbf9294bd5d5288154 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -34,6 +34,7 @@
 
 cmake_minimum_required(VERSION 2.8)
 set(CXX_DISABLE_WERROR TRUE)
+set(CUSTOM_HEADER_DIR fcl)
 include(cmake/base.cmake)
 include(cmake/boost.cmake)
 
diff --git a/include/fcl/config-fcl.hh.in b/include/fcl/config-fcl.hh.in
index 14cc27ddfd5960d453ca509ef6444dc2e60e292d..d510a2901888d97f7833a51f4c325887e46ed6db 100644
--- a/include/fcl/config-fcl.hh.in
+++ b/include/fcl/config-fcl.hh.in
@@ -35,7 +35,7 @@
 #ifndef FCL_CONFIG_FCL_HH
 # define FCL_CONFIG_FCL_HH
 
-# include "config.h"
+# include "fcl/config.h"
 
 #cmakedefine01 FCL_HAVE_SSE
 #cmakedefine01 FCL_HAVE_OCTOMAP